On the Space Pirates' ship, Dr. Ancient realizes that the Cosmos Stones have been merged. On the ground, as the Alpha Gang searches through the wreckage of the D-Lab, Helga erupts from the roof, carrying Dr. Z, and the Gel Jark drags out Seth, but they run from Gigas, who appears behind them. The Space Pirate dinosaurs start blasting the city, causing extensive damage, as the Dark Pterosaur begins to bring about the end of Space and Time.
In the forest nearby, Helga shorts out, and the A-Team begin to praise Dr. Z's memory until he wakes up. Then, Max has a realization, and gives a motivating speech to get everyone willing to keep fighting on. He says that their best chance is the Element Stones because his Dino Bracer had repelled the Black Cosmos Stone earlier. Reese then adds how Seth said that the Stones were positive and the Cosmos Stones negative, so they should equal and cancel each other. When Rex comments that they'd need the Stones to attack with their dinosaurs, Seth says he can make more copies of the Stones.
On the Backlander, after Reese repairs Jonathan, Dr. Z and Seth come out with the Copied Stones. However, Seth tells them that once their dinosaurs are summoned into their full-sized forms with the copied Stones, they can't be put in their chibi form again. However, the D-Team and Alpha Gang accept this and give themselves a few more minutes to enjoy their dinos as small pets, before calling them back, setting the Stones in the Backlander's panel, and preparing to save Existence.
Within striking distance on top of the Backlander, they summon and armor their dinosaurs and attack: Chomp with Lightning Strike, Ace with Sonic Blast, Paris with Emerald Garden, Terry with Magma Blaster, Spiny with Hydro Cutter, and Tank with Spike Arrows. The six blasts form a Fusion Move that hits it target, but only rips a hole in the Dark Pterosaur's outer shield, so they fly inside to finish the job.
However, as soon as they enter, Spectre and the rest of the Spectral Space Pirates appear and challenge them with Gigas, Armatus, and Maximus, and then Brontikens, but the Pterosaur protects them from attacks, and the D-Team and Alpha Gang eventually win.
After docking with the Space Pirates' ship, the D-Team find Max's house, but the parents aren't there. Meanwhile, Dr. Z finds Spectre's dinosaur cages, getting a message from the parents that they're in the bridge. After finding them and letting the D-Team reunite with their parents, they realize that Seth has taken the Backlander!
As Seth pilots the ship, the spectral images of the Space Pirates try to stop him, but he rams through them and, with the Pterosaur helping him, smashes into the actual Dark Pterosaur in the heart of the larger outer shell. As the Element Stones hit the Cosmos Stones, they apparently destroy each other, in any case blasting the Dark Pterosaur apart and dispersing its shadowy energy. A message from the Gel Jark on the now-crashed Backlander tells Jonathan that Seth is injured but still alive.
In a Mesozoic bio-dome on the surface of the Backlander, Dr. Z celebrates his rescue of the dinosaurs from the Space Pirates' ship, and how they all love him for it, letting him finally become the Dinosaur King! Nearby, the A-Team, D-Team, Rod and Laura, and Dr. Owen and Patrick ride on dinosaurs amid a large group. Meanwhile, Dr. Ancient and Dr. Taylor discuss that the dinosaurs' live essence was in the Element Stones, having formed after their spirits merged after being wiped out by the arrival of the Cosmos Stones. Helga and the mothers have also cooked lunch.
Later, after fixing the D-Lab and the city with the Space Pirates' ship, Rex and his family are ready to leave, but Dr. Z is unwilling (until Helga convinces him). They will be unable to return again, as the Backlander's engines are completely destroyed, and the Space Pirates' ship's engines can only make one more time jump. Rex says he will start a branch of the D-Team in the future, but when the A-Team tries to join, Zoe slips in one last "old lady" comment to Ursula. Dr. Drake also gives Dr. Z his gigantic needle.
Max and Zoe say their last good-bye's as the timeship leaves, vowing to always remember their friends.
D-Team/Alpha Gang vs Spectral Space PiratesEdit
Maximus uses Spectral Punisher and Armatus uses Spectral Stinger on Terry, but Spiny and Tank take the hit and are defeated. Maximus and Armatus use Spectral Punisher and Spectral Stinger again, but the Pterosaur blocks it.
D-Team/Alpha Gang win.